MmuEX0009002 @ mm9
Exon Skipping
Gene
ENSMUSG00000026933 | Camsap1
Description
calmodulin regulated spectrin-associated protein 1 [Source:MGI Symbol;Acc:MGI:3036242]
Coordinates
chr2:25789740-25791578:-
Coord C1 exon
chr2:25791370-25791578
Coord A exon
chr2:25790982-25791081
Coord C2 exon
chr2:25789740-25789855
Length
100 bp
Sequences
Splice sites
3' ss Seq
ATTTCTTGTTCCTACAGCAGATA
3' ss Score
5.11
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GCGTAAGGCTGAAGAGGATCGACTACGGAAGGAGGAGGAGAAGGCAAGGCGAGAGCTCATTAAACAGGAATACTTACGGAGGAAGCAGCAGCAGGCCTTGGAGGAGCAAGGACTTGGCAAACCTAAATCAAAGCCTAAAAAGCCTCGGCCAAAGTCAGTTCACCGGGAAGAGTCTTACAGCGACTCTGGCACCAAGTGCTCTTCTACCC
Seq A exon
ATAACTTGAGCCAAACTCACTCTGGCTCCAGCCTATCCTTGGCATCTGCAGCAACAACAGAACCTGAGAGTGTTTATTCGGGGGGCACACCTTCTCACCG
Seq C2 exon
AGTTGAATCACTGGAAGCTTTACCTATCCTGAGCCGCAACCCCAGTCGGAGCACAGACCGAGACTGGGAGACTGCATCAGCAGCTTCCTCTTTGGCCTCTGTGGCTGAGTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026933-'26-26,'26-24,27-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.971 C2=0.600
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTAAGGCTGAAGAGGATCG
R:
GCGGCTCAGGATAGGTAAAGC
Band lengths:
246-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: