DreEX6014322 @ danRer10
Exon Skipping
Gene
ENSDARG00000035122 | camsap1b
Description
calmodulin regulated spectrin-associated protein 1b [Source:ZFIN;Acc:ZDB-GENE-070705-301]
Coordinates
chr5:64938881-64939564:-
Coord C1 exon
chr5:64939350-64939564
Coord A exon
chr5:64939140-64939242
Coord C2 exon
chr5:64938881-64939002
Length
103 bp
Sequences
Splice sites
3' ss Seq
GAATCTCTGTCCCTCACCAGATG
3' ss Score
8.08
5' ss Seq
GCGGTAAGT
5' ss Score
11.37
Exon sequences
Seq C1 exon
GAGGAAAGCTGAAGAGGAAAGAATCAGAAAAGAGGAGGAGAAGGCCAGGAGAGAGTTGATAAAGCAAGAGTACCTTAGGAAGAAACAGCTGGAGCTGTGTGAAGAGCAAGAACAGCCTCAGCCCAAACCCAAGACCAAGCCCAAAAAACAAAGGCTGAAGTCTGTGGTGAAGGAGGAACCCTCCATTGATCCTCTTCCCAAGTGCCCTGCTGCCA
Seq A exon
ATGAGAATCTCATCAGTGCCCAGTCTGGCTCTAGTCTATCACTGGCTTCTGTGGCCACCACTGAACCAGACAGTGTCAACTCAGGAGGGGCGGGATCTCAGCG
Seq C2 exon
AGGAGAATCAGTCGAGTCATTTCCAGGTCTCAGTCGCAATTCCAGTCGGACTACAGAGAGAGACTGGGACAACGGCTCCACCGCGTCTTCCATTACATCAACATCCATGGCGGAATACACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035122-'19-21,'19-19,20-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.881 A=1.000 C2=0.916
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF086836=CAMSAP_CKK=PU(0.8=2.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGAAGGCCAGGAGAGAG
R:
CCGTTGTCCCAGTCTCTCTCT
Band lengths:
256-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]