BtaEX0008542 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008082 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr16:62725843-62735043:+
Coord C1 exon
chr16:62725843-62726000
Coord A exon
chr16:62733592-62733714
Coord C2 exon
chr16:62734844-62735043
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTTATTTTGTAGACA
3' ss Score
10.2
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAGTCTCATAGTGATGATGATACAAAAGATAATAAAGCAGCCAGTCCTGCTCCAACTGACTTGGAGACACGCAGTCCTTCCCCTATTTCAATCTCCAGCAGTGAAACAAGCAGCATTATGCAAAAACTGAAGAAAATGAGAAGCCGCATGGATGAAAA
Seq A exon
ACACTGCTCTCCTGTTCACTACTTCTTCTCTGTCTTTACGTCTCATCACTGGGCCTCTCTCAGTGTCTGTTTTCCCAACCTTCATCCCAAATTCCAGCTGTATATCTACAACCAGTTGGTCAG
Seq C2 exon
GTTTCTGACAAAACGAGAGCAAAAACTAATGCAGCGGCGACAACATGCAGAAGAGCTACTAGAGTGGAAGCGACGTTTAGATGCAGAGGAAGCAGAAATTCGTCAAATGGAAAAACAAGCCTTGGCTGCCTGGGACAAAGAATTGATAAAACCTAAAACTCCTAAGAAAGAGTTGGAGGACCAGAGAGCTGAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008082_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.684
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000010631fB1632
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGACTTGGAGACACGCA
R:
AATTCTTTGTCCCAGGCAGCC
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development