RnoEX0020108 @ rn6
Exon Skipping
Gene
ENSRNOG00000003882 | Cep350
Description
centrosomal protein 350 [Source:RGD Symbol;Acc:621162]
Coordinates
chr13:73536232-73543207:-
Coord C1 exon
chr13:73543053-73543207
Coord A exon
chr13:73537453-73537575
Coord C2 exon
chr13:73536232-73536431
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTTATTTTGTAGACA
3' ss Score
10.2
5' ss Seq
CAGGTAACG
5' ss Score
10.52
Exon sequences
Seq C1 exon
GGCCCTCATGGTGACGACGATGCAGAGGACAAGGCAGCCAGTCCCGGCCCCCCTGGCTCAGAGACCCGCAGTCCTTCCCCGATATCTATTTCCAGCAGTGAAACGAGCAGCATCATGCAGAAACTGAAGAACATGAGAAGCCGCATGGATGAAAA
Seq A exon
ACACTGCTCTCCTGTTCACTACTTCTTCTCTGTCTTTACGTCTCACCACTGGGCCTCTCTCAGTGTCTGTTTCCCCAACCTTCATCCCAAATTCCAGCTGTATATCTACAACCAGTTGGTCAG
Seq C2 exon
GTTTCTGACAAAGCGAGAGCAAAAGCTAATGCAGCGCAGACAGCATGCGGAGGAGCTCCTGGAGTGGAAGCGGCGTCTAGACGCAGAAGAAGCAGAAATCCAACAAATGGAAAAGCAAGCTTTGGCTGCCTGGGACAAAGAACTCGCAAAACCCAAAACTCCTAAGAAAGAACTGGAGAGCCAGAGAACTGCGCAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003882_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.974 A=0.000 C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000005235fB2928
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAGTCCTTCCCCGATATCT
R:
AGGAGTTTTGGGTTTTGCGAGT
Band lengths:
252-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]