GgaEX0005282 @ galGal4
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
centrosomal protein 350kDa [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr8:6002214-6008598:-
Coord C1 exon
chr8:6008441-6008598
Coord A exon
chr8:6005178-6005300
Coord C2 exon
chr8:6002214-6002413
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTTATTTTGTAGACA
3' ss Score
10.2
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAACTTCACAGTGAGGATGACATCAAGCAGAGCAATGGTTCTAGCCCGCTTCCAACTGATGCAGAAACACGCAGCCCTTCCCCAATATCAATCTCCAGCAGTGAGACTAGTAGCATCATGCAGAAACTTAAAAAGATGCGCAGCAGAATGGATGAGAA
Seq A exon
ACACTGCTCTCCTGTTCACTACTTCTTCTCTGTCTTTACGTCTCACCACTGGGCCTCTCTCAGTGTCTGTTTTCCCAACCTCCACCCCAAATTCCAGCTGTATATCTACAACCAATTGGTCAG
Seq C2 exon
GTTCCTAACTAAACGAGAACAGAAGCTGATGCAGCGTCGACAGCATGCTGAAGAATTGCTGGAGTGGAAACGCCGCCTGGATGCAGAGGAAGCAGAAATACGGCAGATAGAAAAGCAGGCTTTGGCTGCCTGGGACAAAGAGCTGCTTAAAACCAAAGTAGCCAAGAAAGAACTGGGGGATCTGAGAACTGAGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.943 A=0.000 C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000006306fB554
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAATGGTTCTAGCCCG
R:
GCCTGCTTTTCTATCTGCCGT
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]