MmuEX1006546 @ mm10
Exon Skipping
Gene
ENSMUSG00000033671 | Cep350
Description
centrosomal protein 350 [Source:MGI Symbol;Acc:MGI:1921331]
Coordinates
chr1:155885907-155894754:-
Coord C1 exon
chr1:155894594-155894754
Coord A exon
chr1:155887136-155887258
Coord C2 exon
chr1:155885907-155886106
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTTATTTTGTAGACA
3' ss Score
10.2
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGCTCTCTTGCTGATGATGATGAAGCAGAGGACAACAAGGCAGCTAGTCCTGGGCCACCCGGCTTGGAGACCCGCAGTCCTTCCCCGATATCGATTTCCAGCAGTGAGACCAGCAGCATCATGCAGAAGCTCAAGAGCATGAGAAGCCGCATGGACGAGAA
Seq A exon
ACACTGCTCTCCTGTTCACTACTTCTTCTCTGTCTTTACGTCTCACCACTGGGCCTCTCTCAGTGTCTGTTTCCCCAACCTTCATCCCAAATTCCAGCTGTATATCTACAACCAGTTGGTCAG
Seq C2 exon
GTTCCTGACGAAGCGAGAACAGAAGCTCATGCAGCGCCGCCAGCACGCAGAGGAGCTCCTGGAGTGGAAGCGGCGTCTGGATGCAGAAGAAGCGGAAATCCAACAAATGGAAAAACAAGCTTTGGCTGCCTGGGACAAAGAACTAGTAAAACCCAGAACTCCTAAGAAAGAACAGGAGAGCCAGAGAACAGAGCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033671_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.994 A=0.000 C2=0.813
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGAGACCAGCAGCATCATG
R:
GCTCTGTTCTCTGGCTCTCCT
Band lengths:
253-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types