HsaEX1008333 @ hg38
Exon Skipping
Gene
ENSG00000135837 | CEP350
Description
centrosomal protein 350 [Source:HGNC Symbol;Acc:HGNC:24238]
Coordinates
chr1:180065115-180075221:+
Coord C1 exon
chr1:180065115-180065272
Coord A exon
chr1:180073786-180073908
Coord C2 exon
chr1:180075022-180075221
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTTATTTTGTAGACA
3' ss Score
10.2
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GACTCTCATAGTGATGATGATACAAAGGATAATAAGGCAACCAGTCCTGGTCCAACTGACTTGGAGACCCGCAGTCCTTCTCCCATTTCAATCTCCAGCAGTGAAACTAGCAGCATTATGCAGAAACTGAAGAAAATGAGAAGCCGCATGGATGAAAA
Seq A exon
ACACTGCTCTCCTGTTCACTACTTCTTCTCTGTCTTTACGTCTCATCACTGGGCCTCTCTCAGTGTCTGTTTTCCCAACCTTCATCCCAAATTCCAGCTGTATATCTACAACCAGTTGGTCAG
Seq C2 exon
GTTTCTGACAAAGCGGGAGCAAAAATTAATGCAACGGCGACAACATGCAGAGGAGCTCCTAGAGTGGAAGCGACGTTTAGATGCAGAAGAAGCAGAAATTCGTCAAATGGAAAAACAAGCTTTGGCTGCCTGGGACAAAGAATTAATAAAACCCAAAACTCCTAAGAAAGAACTGGAGGACCAGAGAACAGAACAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135837_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=0.000 C2=0.740
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000367607fB12137
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACTGACTTGGAGACCCGC
R:
AATTCTTTGTCCCAGGCAGCC
Band lengths:
250-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains