GgaEX0005282 @ galGal3
Exon Skipping
Gene
ENSGALG00000003955 | CEP350
Description
NA
Coordinates
chr8:6322038-6328422:-
Coord C1 exon
chr8:6328265-6328422
Coord A exon
chr8:6325002-6325124
Coord C2 exon
chr8:6322038-6322237
Length
123 bp
Sequences
Splice sites
3' ss Seq
TCTTCCTCCTTATTTTGTAGACA
3' ss Score
10.2
5' ss Seq
CAGGTAACT
5' ss Score
8.63
Exon sequences
Seq C1 exon
GAACTTCACAGTGAGGATGACATCAAGCAGAGCAATGGTTCTAGCCCGCTTCCAACTGATGCAGAAACACGCAGCCCTTCCCCAATATCAATCTCCAGCAGTGAGACTAGTAGCATCATGCAGAAACTTAAAAAGATGCGCAGCAGAATGGATGAGAA
Seq A exon
ACACTGCTCTCCTGTTCACTACTTCTTCTCTGTCTTTACGTCTCACCACTGGGCCTCTCTCAGTGTCTGTTTTCCCAACCTCCACCCCAAATTCCAGCTGTATATCTACAACCAATTGGTCAG
Seq C2 exon
GTTCCTAACTAAACGAGAACAGAAGCTGATGCAGCGTCGACAGCATGCTGAAGAATTGCTGGAGTGGAAACGCCGCCTGGATGCAGAGGAAGCAGAAATACGGCAGATAGAAAAGCAGGCTTTGGCTGCCTGGGACAAAGAGCTGCTTAAAACCAAAGTAGCCAAGAAAGAACTGGGGGATCTGAGAACTGAGCCAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003955_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.962 A=0.000 C2=0.522
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGCAATGGTTCTAGCCCG
R:
GCCTGCTTTTCTATCTGCCGT
Band lengths:
251-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]