DreEX0020926 @ danRer10
Exon Skipping
Gene
ENSDARG00000058000 | cep350
Description
centrosomal protein 350 [Source:ZFIN;Acc:ZDB-GENE-030131-6975]
Coordinates
chr8:14533209-14538179:-
Coord C1 exon
chr8:14538022-14538179
Coord A exon
chr8:14535668-14535790
Coord C2 exon
chr8:14533209-14533441
Length
123 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCTCTTTCTTCTAGACA
3' ss Score
11.04
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GAGTCACCTGTGTCAGGTGTGGCAGAGTCGTCGGCTCCGCCCAGTGTAATTGTGACAGATGCAGACACCCGAAGCCCCTCCCCCATGTCTGTGTCAGGCAGTGAAACCAGCAGCATCATGCAGAAACTGAAGAAGATGCGCTCTCACATGGATGAGAA
Seq A exon
ACACTGCTCTCCTGTCCATTATTTCTTCTCTGTCTTTACGGCTCATCACTGGGCCTCTCTCTCTGTCTGTCTCCCAAATCTCCATCCCAAATTCCAGCTCTTTATCTACAGCCAGTTGGTCAG
Seq C2 exon
ATTTCTCACTAAAAGGGAGCAGCAGTTGATGCAGAGGCGCAGACATGCTGAAGAACTTCTGGAGTGGAGGCAGAGGCTGGATGTGGAGGAGGCTGAAGTACGGCGGATGGAGAAACAAGCTCTGGCGGCCTGGGAGAAGCAGCAGCAGCCACGCAGCAGAACCCAAACGCAGCAGCACAGCCGGGAAAATGAACACAGTCACACTAGCGGAGGACAAAGCCCCATAGGACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058000_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.972 A=0.000 C2=0.797
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCCCAGTGTAATTGTGACA
R:
CGCCAGAGCTTGTTTCTCCAT
Band lengths:
249-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]