BtaEX0009123 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73531175-73540941:-
Coord C1 exon
chr2:73540798-73540941
Coord A exon
chr2:73534813-73534902
Coord C2 exon
chr2:73531175-73531318
Length
90 bp
Sequences
Splice sites
3' ss Seq
GTCTGTCCATCCTGCTTTAGCAT
3' ss Score
7.83
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTCAAAGTTGCAATCCTGAAGTACATTGAGTCTCTTGCCAGGCAGATGGACCCAACAGATTTCATAAACTCTAGTGAGACAAGGCTTGCTGTTTCTAGAATTATAACCTGGACAACAGAACCAAAGAGTTCAGACGTGAGAAAG
Seq A exon
CATAGTCGAGTAGGGGAAGATTTACCCATAAGGGCGGCCTCGACCTGCTCTGGGCCTGGAGAAGGAAACTTGGAAGAAAATTGTAAACAG
Seq C2 exon
GCAGCACAAATTGTGCTCATCTCTCTGTTTGAATTGAACACTCCTGAATTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCATAACCACCTCAAGAATTCCAGTAACACCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.025 A=0.967 C2=0.283
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.1=100)
A:
NO
C2:
PF123483=CLASP_N=PD(18.8=91.7)
Main Inclusion Isoform:
ENSBTAT00000031027fB1741
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGATGGACCCAACAGAT
R:
TTGGCAAGGCACCAAGTAACA
Band lengths:
181-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development