MmuEX0011508 @ mm10
Exon Skipping
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118552013-118560129:+
Coord C1 exon
chr1:118552013-118552156
Coord A exon
chr1:118555285-118555386
Coord C2 exon
chr1:118559986-118560129
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCCCTCTTCTGCTCACCAGTCC
3' ss Score
7.54
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTCAAAGTAGCAATCCTGAAATACATCGAATCTCTAGCCAGACAGATGGACCCCACAGATTTTGTAAATTCCAGCGAAACAAGACTAGCTGTTTCTAGGATCATAACATGGACTACAGAACCAAAGAGTTCAGACGTGAGAAAG
Seq A exon
TCCCAGCGTCAGCGTAGTCGAGCAGGGGAGGATGTCCCTGGTAGGTCAGTTCCCACCTGCTCTGGGCCTGGAGAAGGAAGCTTGGAAGAAAGTTGTAAACAG
Seq C2 exon
GCAGCACAAATTGTGCTCATCTCTCTGTTTGAACTGAACACGCCTGAATTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCATAACCACCTCAAGAACTCCAGTAACACCGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.457 C2=0.218
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.4=100)
A:
NO
C2:
PF123483=CLASP_N=PD(17.4=83.3)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACAGATGGACCCCACAGA
R:
CACACCGGTGTTACTGGAGTT
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types