HsaEX1008861 @ hg38
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:121387763-121397283:-
Coord C1 exon
chr2:121397140-121397283
Coord A exon
chr2:121391249-121391350
Coord C2 exon
chr2:121387763-121387906
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCAACTTTCCTGTTTGCCAGTCC
3' ss Score
6.9
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTCAAAGTTGCAATCCTGAAATACATTGAGTCTCTGGCCAGACAGATGGATCCAACAGATTTTGTAAACTCTAGTGAGACAAGGCTTGCTGTTTCTAGAATCATAACCTGGACAACAGAACCAAAGAGTTCAGACGTGAGAAAG
Seq A exon
TCCTCACTTCAGCGTAGTCGAGTAGGTGAGGATTTCCCCACTAGGTCAGCTTCAACCTGCTCTGGTCCTGGAGAAGGAAACTTGGAAGAAAGTTGTAAACAG
Seq C2 exon
GCAGCACAGATTGTGCTAATCTCTCTGTTTGAATTGAATACTCCTGAATTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCCACCAAACTCCTGCACAACCACCTCAAGAATTCCAGTAACACCAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.068 A=1.000 C2=0.277
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.1=100)
A:
NO
C2:
PF123483=CLASP_N=PD(18.8=91.7)
Main Inclusion Isoform:
ENST00000263710fB12438
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAGTCTCTGGCCAGACAGA
R:
CTTGAGGTGGTTGTGCAGGAG
Band lengths:
242-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains