RnoEX0021469 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34528731-34542149:+
Coord C1 exon
chr13:34528731-34528874
Coord A exon
chr13:34534941-34535042
Coord C2 exon
chr13:34542006-34542149
Length
102 bp
Sequences
Splice sites
3' ss Seq
TTCCCTCTTCTGCTCACCAGTTC
3' ss Score
7.5
5' ss Seq
CAGGTAGAT
5' ss Score
7.25
Exon sequences
Seq C1 exon
GTCAAAGTGGCGATCCTGAAATACATCGAGTCTCTGGCCAGACAGATGGACCCCACAGATTTTGTAAATTCCAGTGAAACAAGACTTGCTGTTTCTAGGATCATAACATGGACTACAGAACCCAAGAGTTCAGATGTGAGAAAG
Seq A exon
TTCCAGCGTCAGCGTAGTCGAGCAGGGGACGATGTCCCTGGTAGGTCAGTCCCCACCTGCTCCGGGCCTGGAGAAGCAAACTTGGAAGAAAGTTGTAAACAG
Seq C2 exon
GCAGCACAGATTGTGCTCATCTCTCTGTTCGAACTGAACACTCCTGAATTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGACGGTGCCACCAAACTCCTGCATAACCACCTTAAGAACTCCAGTAACGCTGGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.4=100)
A:
NO
C2:
PF123483=CLASP_N=PD(17.4=83.3)
Main Inclusion Isoform:
ENSRNOT00000061515fB3150
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAAGTGGCGATCCTGAAA
R:
TATGCAGGAGTTTGGTGGCAC
Band lengths:
256-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]