GgaEX0017565 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25611699-25621937:-
Coord C1 exon
chr7:25621794-25621937
Coord A exon
chr7:25615679-25615774
Coord C2 exon
chr7:25611699-25611842
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTTGTCAAACCCAGACC
3' ss Score
6.46
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTGAAAGTTGCTATCCTGAAATATATTGAGTCCTTGGCAAGACAGATGGATCCAACGGACTTTGTGAACTCTAGTGAGACAAGACTTGCTGTGTCTAGAATTATAACTTGGACAACAGAACCAAAGAGCTCAGATGTGAGAAAG
Seq A exon
ACCATGCATAGTTGGGTAGGTGAGGATTTGCCAGCTAGGACAACTACAGCTTCCTCAGGGCCCGGTGAAGGAAACTTGGAAGAAAAATGTAAACAG
Seq C2 exon
GCAGCACAAATAGTCCTGATTTCTCTCTTTGAACTGAACACTCCCGAGTTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCTACCAAGCTCCTGCACAACCACCTCAAGAACTCCAGTAACACCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_MULTIEX1-2/3=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.033 A=1.000 C2=0.417
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=PD(24.5=95.8)
A:
PF123483=CLASP_N=PD(3.6=21.9)
C2:
PF123483=CLASP_N=PD(18.1=87.5)
Main Inclusion Isoform:
ENSGALT00000019030fB2068
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGATGGATCCAACGGACT
R:
TTGGCAAGGCACCAAGTAACA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]