GgaEX0017565 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27685856-27696094:-
Coord C1 exon
chr7:27695951-27696094
Coord A exon
chr7:27689836-27689931
Coord C2 exon
chr7:27685856-27685999
Length
96 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTTTGTCAAACCCAGACC
3' ss Score
6.46
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
Exon sequences
Seq C1 exon
GTGAAAGTTGCTATCCTGAAATATATTGAGTCCTTGGCAAGACAGATGGATCCAACGGACTTTGTGAACTCTAGTGAGACAAGACTTGCTGTGTCTAGAATTATAACTTGGACAACAGAACCAAAGAGCTCAGATGTGAGAAAG
Seq A exon
ACCATGCATAGTTGGGTAGGTGAGGATTTGCCAGCTAGGACAACTACAGCTTCCTCAGGGCCCGGTGAAGGAAACTTGGAAGAAAAATGTAAACAG
Seq C2 exon
GCAGCACAAATAGTCCTGATTTCTCTCTTTGAACTGAACACTCCCGAGTTTACCATGTTACTTGGTGCCTTGCCAAAAACATTCCAGGATGGTGCTACCAAGCTCCTGCACAACCACCTCAAGAACTCCAGTAACACCAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-'35-46,'35-45,36-46
Average complexity
S
Mappability confidence:
88%=75=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.146 A=1.000 C2=0.375
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACAGATGGATCCAACGGACT
R:
TTGGCAAGGCACCAAGTAACA
Band lengths:
181-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]