DreEX0021916 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38460250-38463487:+
Coord C1 exon
chr9:38460250-38460393
Coord A exon
chr9:38461653-38461748
Coord C2 exon
chr9:38463341-38463487
Length
96 bp
Sequences
Splice sites
3' ss Seq
GCCCTGTCTTGATGGCCCAGACA
3' ss Score
4.73
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
GTGAAGGTGGCCATTCTGAAATACATCGAGTCTCTGGCACGGCAGATGGACCCTGGAGACTTTGTGAATTCAAGTGAGACAAGATTAGCCGTGTCTCGCATTATCACCTGGACCACAGAACCCAAGAGCTCGGATGTCAGAAAA
Seq A exon
ACACTTCATAACTGGGCATGTGAGGAGTTGTCAGGCAGGCCCAGCACTACAGCTCTACTCCCCGGAGAGGGTCAACTGGAGGAGAGGTGTAAGCAG
Seq C2 exon
GCCGCCCAGGTGGTGCTGATCTCGCTCTTTGAGCTGAACACTCCTGAGTTCACCATGCTGCTCGGCGCTCTGCCGAAAACATTCCAGGATGGAGCCACCAAACTCCTGCATAATCATCTCAAGAACTCTAGCAACACCAGCAACGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.045 A=0.938 C2=0.394
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(20.2=100)
A:
NO
C2:
PF123483=CLASP_N=PD(18.5=87.8)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACCCAAGAGCTCGGATGT
R:
CGTTGCTGGTGTTGCTAGAGT
Band lengths:
173-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]