BtaEX0009562 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011741 | COL13A1
Description
Bos taurus collagen, type XIII, alpha 1 (COL13A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001105433]
Coordinates
chr28:26363682-26368396:+
Coord C1 exon
chr28:26363682-26363726
Coord A exon
chr28:26365229-26365255
Coord C2 exon
chr28:26368343-26368396
Length
27 bp
Sequences
Splice sites
3' ss Seq
TCTTCTTTTCTCTCACACAGGGT
3' ss Score
11.21
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAGAACGGGGAATGCCAGGGATGCCGGGCAAACATGGAACAAAG
Seq A exon
GGTGAACCTGGGATCCCAGGAGCCAAG
Seq C2 exon
GGTGAGAAGGGGGCTGCGGGGTCCCCCGGGCCACTCGGCCTCTTGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011741-'21-22,'21-20,22-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(19.7=100),PF0139113=Collagen=PU(3.1=13.3)
A:
PF0139113=Collagen=FE(11.3=100),PF0139113=Collagen=FE(12.3=100)
C2:
PF0139113=Collagen=FE(27.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGGGGAATGCCAGGGAT
R:
CTTCTGCCCCAAGAGGCC
Band lengths:
96-123
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development