RnoEX0022830 @ rn6
Exon Skipping
Gene
ENSRNOG00000000552 | Col13a1
Description
collagen type XIII alpha 1 chain [Source:RGD Symbol;Acc:1595704]
Coordinates
chr20:31488627-31492105:-
Coord C1 exon
chr20:31492073-31492105
Coord A exon
chr20:31491310-31491336
Coord C2 exon
chr20:31488627-31488671
Length
27 bp
Sequences
Splice sites
3' ss Seq
CCATCTTCTTTCCCACACAGGGT
3' ss Score
10.19
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGCTCCTGGGATTGCCGTGGCTGGGATGAAG
Seq A exon
GGTGAGCCAGGGACGCCAGGAGCCAAG
Seq C2 exon
GGTGAGAAGGGTGCTACAGGCTCCCCTGGCCTCCTGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000552-'21-25,'21-24,22-25
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(10.3=54.5),PF0139113=Collagen=FE(15.9=100)
A:
PF0139113=Collagen=FE(12.5=100)
C2:
PF0139113=Collagen=FE(22.2=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGGGATTGCCGTG
R:
CTTCTGCCCCAGGAGGCC
Band lengths:
75-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]