MmuEX6048688 @ mm10
Exon Skipping
Gene
ENSMUSG00000058806 | Col13a1
Description
collagen, type XIII, alpha 1 [Source:MGI Symbol;Acc:MGI:1277201]
Coordinates
chr10:61871290-61874770:-
Coord C1 exon
chr10:61874738-61874770
Coord A exon
chr10:61873994-61874020
Coord C2 exon
chr10:61871290-61871334
Length
27 bp
Sequences
Splice sites
3' ss Seq
CCGCCTTCTTTCCCACACAGGGT
3' ss Score
10.15
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGGGTTCCTGGGATTGCCGTGGCTGGGATGAAG
Seq A exon
GGTGAGCCAGGGACGCCAGGAACCAAG
Seq C2 exon
GGTGAGAAGGGTGCAGCAGGCTCCCCTGGCCTCCTGGGGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000058806-'29-25,'29-24,30-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(12.5=63.6),PF0139113=Collagen=FE(15.6=100)
A:
PF0139113=Collagen=FE(12.5=100)
C2:
PF0139113=Collagen=FE(21.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCCTGGGATTGCCGTGG
R:
CTTCTGCCCCAGGAGGCC
Band lengths:
75-102
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types