BtaEX0009631 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013103 | COL1A1
Description
Bos taurus collagen, type I, alpha 1 (COL1A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001034039]
Coordinates
chr19:37101251-37102959:+
Coord C1 exon
chr19:37101251-37101358
Coord A exon
chr19:37101905-37101958
Coord C2 exon
chr19:37102852-37102959
Length
54 bp
Sequences
Splice sites
3' ss Seq
GCTCTCTCTGCTCTCCCTAGGGT
3' ss Score
11.04
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGACCGTGGTGAGACCGGCCCTGCTGGACCTCCTGGTGCTCCTGGCGCTCCCGGTGCCCCCGGCCCTGTCGGACCTGCCGGCAAGAGCGGTGATCGTGGTGAGACC
Seq A exon
GGTCCTGCTGGTCCTGCTGGTCCCATTGGCCCCGTTGGTGCCCGTGGCCCCGCT
Seq C2 exon
GGTCCCCCTGGCTCTGCTGGTTCTCCCGGCAAAGATGGACTCAATGGTCTCCCAGGCCCCATCGGTCCCCCTGGGCCTCGAGGTCGCACTGGTGATGCTGGTCCTGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013103_MULTIEX1-38/41=37-41
Average complexity
C3
Mappability confidence:
96%=95=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
PF0139113=Collagen=PU(17.5=61.1)
C2:
PF0139113=Collagen=FE(56.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAGCGGTGATCGTGGTG
R:
AGCAGGACCAGCATCACCAG
Band lengths:
133-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development