RnoEX0022998 @ rn6
Exon Skipping
Gene
ENSRNOG00000003897 | Col1a1
Description
collagen type I alpha 1 chain [Source:RGD Symbol;Acc:61817]
Coordinates
chr10:82758565-82759288:+
Coord C1 exon
chr10:82758565-82758672
Coord A exon
chr10:82759014-82759067
Coord C2 exon
chr10:82759181-82759288
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACACACTATTTTCTCTCCAGGGT
3' ss Score
8.92
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGACCGTGGTGAGACTGGCCCTGCTGGCCCCCCTGGTGCTCCTGGTGCTCCTGGTGCTCCCGGCCCTGTTGGTCCTGCTGGCAAGAATGGCGACCGTGGTGAGACT
Seq A exon
GGTCCTGCTGGTCCTGCTGGTCCCATTGGCCCTGCTGGTGCCCGTGGTCCTGCT
Seq C2 exon
GGACCCCAAGGCCCCCGTGGTGACAAGGGTGAGACAGGCGAACAAGGTGACAGAGGCATAAAGGGTCATCGTGGCTTCTCTGGTCTCCAGGGTCCTCCTGGCTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003897-'85-55,'85-53,88-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(38.9=100),PF0139113=Collagen=FE(42.7=100)
A:
PF0139113=Collagen=PD(8.9=44.4),PF0139113=Collagen=FE(20.7=100),PF0139113=Collagen=PU(13.3=44.4)
C2:
PF0139113=Collagen=PD(22.0=50.0),PF0139113=Collagen=FE(58.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCCTGCTGGCAAGAATG
R:
AGGAGGACCCTGGAGACCA
Band lengths:
137-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]