MmuEX6088965 @ mm9
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94810020-94810777:+
Coord C1 exon
chr11:94810020-94810127
Coord A exon
chr11:94810495-94810548
Coord C2 exon
chr11:94810670-94810777
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACACACTGTTTTCTCTCCAGGGT
3' ss Score
10.29
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGACCGTGGTGAGACTGGCCCCGCTGGCCCCCCTGGTGCCCCTGGTGCTCCCGGTGCTCCCGGCCCTGTTGGTCCCGCTGGCAAGAATGGCGATCGTGGTGAGACT
Seq A exon
GGTCCTGCTGGTCCTGCTGGTCCCATTGGCCCTGCTGGTGCCCGTGGCCCTGCT
Seq C2 exon
GGACCCCAAGGCCCCCGTGGTGACAAGGGTGAGACAGGCGAACAAGGTGACAGAGGCATAAAGGGTCATCGTGGCTTCTCTGGTCTCCAGGGTCCTCCTGGTTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'47-46,'47-45,48-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(50.0=100)
A:
PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=PU(13.3=44.4)
C2:
PF0139113=Collagen=PD(16.4=27.8),PF0139113=Collagen=FE(58.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCGTGGTGAGACTGG
R:
CTGTCTCACCCTTGTCACCAC
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: