MmuEX6088965 @ mm10
Exon Skipping
Gene
ENSMUSG00000001506 | Col1a1
Description
collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
Coordinates
chr11:94948706-94949463:+
Coord C1 exon
chr11:94948706-94948813
Coord A exon
chr11:94949181-94949234
Coord C2 exon
chr11:94949356-94949463
Length
54 bp
Sequences
Splice sites
3' ss Seq
ACACACTGTTTTCTCTCCAGGGT
3' ss Score
10.29
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGTGACCGTGGTGAGACTGGCCCCGCTGGCCCCCCTGGTGCCCCTGGTGCTCCCGGTGCTCCCGGCCCTGTTGGTCCCGCTGGCAAGAATGGCGATCGTGGTGAGACT
Seq A exon
GGTCCTGCTGGTCCTGCTGGTCCCATTGGCCCTGCTGGTGCCCGTGGCCCTGCT
Seq C2 exon
GGACCCCAAGGCCCCCGTGGTGACAAGGGTGAGACAGGCGAACAAGGTGACAGAGGCATAAAGGGTCATCGTGGCTTCTCTGGTCTCCAGGGTCCTCCTGGTTCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001506-'62-53,'62-52,63-53
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(50.0=100)
A:
PF0139113=Collagen=FE(24.3=100),PF0139113=Collagen=PU(13.3=44.4)
C2:
PF0139113=Collagen=PD(0.1=0.0),PF0139113=Collagen=FE(58.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACCGTGGTGAGACTGG
R:
CTGTCTCACCCTTGTCACCAC
Band lengths:
145-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types