BtaEX0009815 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004664 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr11:98943457-98951239:+
Coord C1 exon
chr11:98943457-98943586
Coord A exon
chr11:98944186-98944279
Coord C2 exon
chr11:98944840-98951239
Length
94 bp
Sequences
Splice sites
3' ss Seq
TCCCCCACCCTGCCTGCCAGGGG
3' ss Score
6.95
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
AGGGTCTCCCCAGACACCCGCGCACCCACCCGCTTCGTGGACGATGAGGAGCTAGCATACGTGATCCAGCGGTACCGGGAGATCCATGACATGCTCCACGCCCTGCTGGGCATGCCCACCAACATCCTGG
Seq A exon
GGGAGATCGTGGTGAAATGGTTTGAGGCTGTCCAGACCGGCCTGCCCATGTGCGTCCTGAGTGCACTCTTTGGACCGATCCGACTCAGCGCCCA
Seq C2 exon
GAGCCTACAATTGCTGATCTCGGAGCTGATCCCATGGGCAGTTGAGAATGGCCGCAGAGCCCCGTGTGTCCTCAACGTGTACTACGAGCGGCGCTGGGAACAGCCTCTGCAGGCTCTGCGGCAGGAGCTGGGCATCACGGAACCACCCCTGCGTGTGGAGGGCCTGGTGTAGACCCTGAGCGCCTGAGGCCCCGCCCCACCCCCCGCTTCCTCCGGGGGTGGAGCACATCTGTGCCAGCACCCAGGTTCCTCTGTGAACTCTGACCCTTGGACGTCACTCATCATAATTTATCAGAGGGAGCAGCCAGTGGAGCTCCTGGGGAGCCAGAAGTGAACCTCGAGTGCTCAGGGATTGCTCAAGTCCACAACCCATGTGCCTGACCCCTCCCTGCCTGCCAGCGTTCTCTGGGTGCCAGCCTGGGGGAGTCTTCACAGGGGGAAGGGCTACCCTTTATTCCCAAGGCCTGAGGAAGAGGGAGGCAGAGGGGGAGGCGGGTCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004664_MULTIEX2-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(29.1=100)
A:
PF050198=Coq4=FE(20.9=100)
C2:
PF050198=Coq4=PD(33.8=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGGACGATGAGGAGCTAG
R:
GTACACGTTGAGGACACACGG
Band lengths:
178-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development