GgaEX0006743 @ galGal4
Exon Skipping
Gene
ENSGALG00000004927 | COQ4
Description
coenzyme Q4 [Source:HGNC Symbol;Acc:HGNC:19693]
Coordinates
chr17:4983785-4985009:-
Coord C1 exon
chr17:4984880-4985009
Coord A exon
chr17:4984187-4984280
Coord C2 exon
chr17:4983785-4983932
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTGCTGCCTCCCAGGTG
3' ss Score
10.21
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
AAGGTTTCTCCAGACACCCGCATGCCAGCCAAGTTCGTGGATGATGAAGAGCTGGCCTACGTGATCCAGCGGTACCGGGAAGTGCACGACCTGATGCACACCCTGCTGGGCATGCCCACCAACATGCTGG
Seq A exon
GTGAGGTGGTGGTGAAATGGTTCGAAGCCGTCCAGACGGGGCTGCCCATGTGTGTGCTGGGAGCAGCGTTTGGCCCCGTTCGTCTCAATGCACG
Seq C2 exon
AAAGCTGCAGGTCCTGGCCACGGAGCTGCTCCCATGGGCGGTCCGGAGCGGGCGCAACGCCAGCTGTGTCCTCAATGTCTATTACGAGCAGCGCTGGGAGCAGAGCGTGGAATCCCTGCGGGAGGAAATTGGCATCTTCCCCCCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.5=100)
A:
PF050198=Coq4=FE(14.0=100)
C2:
PF050198=Coq4=FE(22.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGCTGGCCTACGTGAT
R:
CCAGCGCTGCTCGTAATAGAC
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]