RnoEX6016213 @ rn6
Exon Skipping
Gene
ENSRNOG00000026691 | Coq4
Description
coenzyme Q4 [Source:RGD Symbol;Acc:1304638]
Coordinates
chr3:8356048-8357871:+
Coord C1 exon
chr3:8356048-8356177
Coord A exon
chr3:8356653-8356746
Coord C2 exon
chr3:8357131-8357871
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTACCCTCCCTTACTTCTAGGAG
3' ss Score
10.46
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAAGTCTCTCCAGATACACGAGCACCTACACGCTTTGTGGACGATGAAGAACTAGCCTATGTGATCCAGAGATACCGTGAGGTGCATGATATGCTCCACACCCTGCTGGGGATGCCCACCAACATGCTCG
Seq A exon
GAGAAGTTGTGGTAAAGTGGTTTGAGGCTGTGCAGACTGGCCTTCCCATGTGCATCCTGGGAGCACTCTTCGGACCCGTCCGTCTCCGTGCTCA
Seq C2 exon
GAGCCTCCAGGTGCTTTTCTCAGAGCTGATCCCTTGGGCGATTCAGAACGGGCGCAGGGCCCCATGTGTCCTCAACATCTACTATGAACAGCGTTGGGAGCAGCCCCTGACAGCCCTACGGGAGGAGCTGGGCATCAGTCCTCCCCCAAAACACATCCAGGGCCTGGCCTAGCCTTAGCTGCCTCCCAGGGAGGATGGAGCCTTCCTTTCCACACACTGCCTTCCTGGAGACAAAAGAGCCCTTGGCTGCTTGTGTTTCTTCTCATTGAACCTTGAACTCAGAGTGTCACTTATCATAATTTTTATAGTCACTGCTGCCATGTGCCTTGAGGGCCTGCCCAGGAAAGAGAGGTAGGGCAGTGAGGCCCCAGGGTGCTGTAAGCTATCTGGAGAGAGCAGTACGTGTGCCTGGAGCAGCCATCTTGGATCAGTCGGGATTGCTCAGGTCTGAGGCCCCTCTTCTGGACGGTGATTCAGGCTCTCTTTGAAAGCTTGACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026691-'9-9,'9-6,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
PF050198=Coq4=FE(14.0=100)
C2:
PF050198=Coq4=PD(22.5=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATACACGAGCACCTACACGC
R:
GTTCTGAATCGCCCAAGGGAT
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]