HsaEX6063220 @ hg19
Exon Skipping
Gene
ENSG00000167113 | COQ4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:19693]
Coordinates
chr9:131094432-131096351:+
Coord C1 exon
chr9:131094432-131094561
Coord A exon
chr9:131095129-131095222
Coord C2 exon
chr9:131095753-131096351
Length
94 bp
Sequences
Splice sites
3' ss Seq
AACACATCCCTCACCCACAGGGG
3' ss Score
9.11
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AGGGTCTCCCCAGACACCCGAGCACCCACCCGCTTCGTGGATGATGAGGAGCTAGCGTATGTGATTCAGCGGTACCGGGAGGTGCACGACATGCTTCACACCCTGCTGGGGATGCCCACCAACATCCTGG
Seq A exon
GGGAGATCGTGGTGAAATGGTTTGAGGCTGTCCAGACTGGCCTGCCCATGTGCATCCTGGGTGCATTCTTTGGACCGATCCGACTTGGCGCTCA
Seq C2 exon
GAGCCTGCAAGTGCTGGTCTCGGAGTTGATCCCATGGGCCGTTCAGAACGGGCGCAGAGCCCCATGTGTCCTCAACCTGTACTATGAGCGGCGCTGGGAGCAGTCCCTGAGGGCTCTGCGGGAGGAGCTGGGCATTACAGCACCACCCATGCACGTCCAGGGCTTGGCCTGAGCTCCTGAGCCAGCGGGGCCTGGCCTACCTCCCCCATCCCCTGCTTCCCTTGGAGGCAGAGGGCTCCCTTGACTACCTTTGTTCCTCTTCTTTGAACACTGACCCTTGGACAACATTTATCATAATTTGTCATAACCACTGCTGAGTGGCCTTGAGGACGAACCCCGCAGGGAGCAAGCAGTACAGTGGCATTCCCAGGGGGACCAGCAGCTACCCAAGGAGAACCATGCATGAACAGTATCAGTCGTCTGGGCTCATGCTGGGATGTCGCAGTGCTCCTGTTGCAACTCCTCCCAGCCAGCCAGGTTTGCTGGGGGCCAGGCTGGGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167113-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.241 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
PF050198=Coq4=FE(14.0=100)
C2:
PF050198=Coq4=PD(22.5=86.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTTCGTGGATGATGAGGAG
R:
ACAGGTTGAGGACACATGGGG
Band lengths:
180-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)