DreEX6013456 @ danRer10
Exon Skipping
Gene
ENSDARG00000104733 | coq4
Description
coenzyme Q4 homolog (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-060526-218]
Coordinates
chr5:53769611-53773785:-
Coord C1 exon
chr5:53773656-53773785
Coord A exon
chr5:53773340-53773433
Coord C2 exon
chr5:53769611-53770377
Length
94 bp
Sequences
Splice sites
3' ss Seq
AGTTATTCATTTATTCACAGGTG
3' ss Score
6.72
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
AGAGTCACCCCTGACACGAGGGCTGAAGTGAAGTTTGTAGACAATGAGGAATTGGCGTATGTCATGCAACGGTATCGTGAAGTACATGACTTGTTGCATACTTTGCTTGGAATGCCCACAAATATGCTAG
Seq A exon
GTGAGGTTGCTGTGAAATGGTTTGAAGCTGCACAAACTGGTCTCCCCATGTGTATATTGGGAGCAGCACTTGGACCCCTTCGACTGTCTGTCAG
Seq C2 exon
CCGCCTACAGTTGCTCGGTCAGTCTCTTGGACTTTGGGCCCTGCGCAATGGTGGTCGTGCAAGATGTGTTTTGAGCATCTACTATGAACGGCGCTGGGAGCAGACTCTTGATGAACTCAGACACGAGCTAAACATTGAGGAACCCCCAGTTAGTCTAATTGCATCAATCAAGAACTCATCTTCAAAATCATACTATTTCTAAATAACAGAAGGAAATTTATTTGAGCTTACCACTTACATATAACTCCTTTTCTTCCACCTGCAATGGCCTAAACATAAATCTAAAGAAAGTTATTCTGACGTAAAAAGTTTTATATAAAAGGTATCTGTGTCTTTCAAGATATTTATACTGCACTAACATTGACCTCTTGATAACATGCACTGGAGGTATACAAGTGCATGAGTAAAAAAAAATGCTATTATAAATCATATTGAGATAAATTGTCTAAATTAATAATACAAAATAATAATGGCAAAAATGTTGTGTAACCTGAATCATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104733-'8-8,'8-7,9-8=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
PF050198=Coq4=FE(14.0=100)
C2:
PF050198=Coq4=PD(22.5=73.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGTATGTCATGCAACGGTA
R:
GCGCCGTTCATAGTAGATGCT
Band lengths:
171-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]