MmuEX6100092 @ mm9
Exon Skipping
Gene
ENSMUSG00000026798 | Coq4
Description
coenzyme Q4 homolog (yeast) [Source:MGI Symbol;Acc:MGI:1098826]
Coordinates
chr2:29650901-29653455:+
Coord C1 exon
chr2:29650901-29651030
Coord A exon
chr2:29651456-29651549
Coord C2 exon
chr2:29651928-29653455
Length
94 bp
Sequences
Splice sites
3' ss Seq
CTATCCTTCCTTATCGCTAGGAG
3' ss Score
8.58
5' ss Seq
TCAGTAAGT
5' ss Score
9.14
Exon sequences
Seq C1 exon
AAGGTCTCTCCAGACACACGAGCACCTACACGCTTTGTGGACGATGAAGAGCTAGCCTATGTGATCCAGAGGTACCGTGAAGTGCACGACATGCTCCACACCCTGCTGGGCATGCCCACCAACATGCTCG
Seq A exon
GAGAGGTTGTGGTAAAGTGGTTTGAGGCTGTGCAGACCGGCCTACCAATGTGCATCCTGGGAGCACTCTTCGGACCCATCCGCCTCCGTACTCA
Seq C2 exon
GAGCCTCCAAGTGCTGTTCTCGGAGCTGATCCCTTGGGCGATTCAGAACGGGCGCAGGGCCCCATGTGTCCTCAACATCTACTATGAGCAGCGTTGGGAGCAGCCCCTGACAGCCCTGCGGGAGGAGCTGGGCATCAGTCCTCCCCCAAAACATATCCAGGGCCTGGCCTAGCTTGAGCTGCCACACAGGGAGAATTAAGCCTTTCTCTCCACACACTGCCTTCCTCGGGACAAAAGAGCCTCTCAGCTGCTTTTGTTTCTTCTCTTTGAACCTTGAACTCAGAGTGTCACTTGCTGCCTTGTACCTTCAGGGCCAGCCCAGGAGAGAGAGGCAGAGCAATGGAGCCCCAGGCTGCTGTGAGCCATCCGGAGAGAGCAGTATGTATGCCTCGAACAGCCATATTGGATCATACTGATCATTGCAGTCTGAGGCTCCTCTTCTGGACAGTGACTCTGACAGGGCGTTTTGTCAAGCTGTCTTCGAAAGCTTGACTACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026798-'6-9,'6-8,8-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
PF050198=Coq4=FE(14.0=100)
C2:
PF050198=Coq4=PD(22.5=86.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACACACGAGCACCTACAC
R:
TCTGAATCGCCCAAGGGATCA
Band lengths:
167-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: