GgaEX0006743 @ galGal3
Exon Skipping
Gene
ENSGALG00000004927 | COQ4
Description
NA
Coordinates
chr17:5614469-5616377:-
Coord C1 exon
chr17:5616248-5616377
Coord A exon
chr17:5615555-5615648
Coord C2 exon
chr17:5614469-5615300
Length
94 bp
Sequences
Splice sites
3' ss Seq
TGTGCTCTGCTGCCTCCCAGGTG
3' ss Score
10.21
5' ss Seq
ACGGTAGGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
AAGGTTTCTCCAGACACCCGCATGCCAGCCAAGTTCGTGGATGATGAAGAGCTGGCCTACGTGATCCAGCGGTACCGGGAAGTGCACGACCTGATGCACACCCTGCTGGGCATGCCCACCAACATGCTGG
Seq A exon
GTGAGGTGGTGGTGAAATGGTTCGAAGCCGTCCAGACGGGGCTGCCCATGTGTGTGCTGGGAGCAGCGTTTGGCCCCGTTCGTCTCAATGCACG
Seq C2 exon
AAAGCTGCAGGTCCTGGCCACGGAGCTGCTCCCATGGGCGGTCCGGAGCGGGCGCAACGCCAGCTGTGTCCTCAATGTCTATTACGAGCAGCGCTGGGAGCAGAGCGTGGAATCCCTGCGGGAGGAAATTGGCATCTTCCCCCCTCCGGCTGTCTGTGTGTGAGAGCTCAATGCTGCGGGGGGGGGGGGGGTGTGGGTAGGGGGGGGGATAGGGGAGCCCCCGTTGGCAGCTGTTTCCTGCACTGTTCCGTCCCCTCCTGCCGCAGCAGCGCGGCGTGGCTCTGCTGGTGCCGACCTGGCGCTGAGTTTTCTCCTGTCGAGACCTGGCAGCCCCCTGTTTGGGGGGGGATCTCCCCGTGCCCCGACAACTGTGATCTCTTCCGCTGTTTGTCAGCAGGCGGAGAGGTGGCCAAATCCCGCCGTGCTTTTGCAGCCGGGTTTTGCTGGGTTGGGAGTGAGTGCAGACACAGCAAACACGTGGCACGCAGGGGGTCGGGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004927_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF050198=Coq4=FE(19.4=100)
A:
PF050198=Coq4=FE(14.0=100)
C2:
PF050198=Coq4=PD(22.5=90.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAGCTGGCCTACGTGAT
R:
CCAGCGCTGCTCGTAATAGAC
Band lengths:
183-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]