BtaEX0010048 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008944 | CRB1
Description
Bos taurus crumbs homolog 1 (Drosophila) (CRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192482]
Coordinates
chr16:78269482-78320235:+
Coord C1 exon
chr16:78269482-78269610
Coord A exon
chr16:78273776-78273902
Coord C2 exon
chr16:78320020-78320235
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGCTGTTTCTGTCTTGAAGGTG
3' ss Score
10.09
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
ATACCTCCGATTACCCTCCACCGTCTGTGGGAATGAGAAGGCCAACCTCACTTGCTACAACGGGGGCAACTGCACGGCGTTCCAGGGAGAAATGAAATGTGCCTGCGGGCCAGGTTTTACGGGGGAACG
Seq A exon
GTGTGACAAGGACATCGACGAGTGCGCGTCCGACCCCTGCCTGCACGGCGGCCGGTGTCACGACCTGCTGAACGGGTTCCGGTGCGTGTGCGCGCTGGCCTTCGCCGGGCCGCGCTGCGAGCTGGAC
Seq C2 exon
TTGGCAGATGACTTGCTGTCGGACGTCTTCACCACCATCGGTTCAGTGACATTAGCCTTGTTGCTGATCCTCTTTCTGGCAGTGGTGGCTTCTGTTCTCGCCTCCAACAAAAGGGCAACCCAGGGCTCCTACAGCCCGAGCCGTCAGGAAAAGGACAGCTCTCGTGTGGAGATGTGGAGCGTGATGGACGCCCCTGCAGCAGAGAGGCTGATCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008944-'14-17,'14-15,17-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.113
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=70.5)
A:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAACCTCACTTGCTACAA
R:
CTGTCCTTTTCCTGACGGCTC
Band lengths:
248-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development