MmuEX7000462 @ mm10
Exon Skipping
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:139197056-139234855:-
Coord C1 exon
chr1:139234727-139234855
Coord A exon
chr1:139231664-139231790
Coord C2 exon
chr1:139197056-139198787
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTATTCATTTTCAAGGTG
3' ss Score
10
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAATGAGAAGAGAAACTTCACTTGCTACAATGGAGGCAGCTGCTCCATGTTCCAGGAGGACTGGCAATGTATGTGCTGGCCAGGTTTCACTGGAGAGTG
Seq A exon
GTGTGAAGAGGACATCAACGAGTGTGCCTCCGATCCCTGCATCAATGGAGGACTGTGCAGGGACTTGGTCAACAGGTTCCTATGCATCTGTGATGTGGCCTTCGCTGGCGAGCGCTGTGAGCTGGAC
Seq C2 exon
CTGGCTGATGACAGGCTCCTGGGCATTTTCACCGCTGTTGGCTCCGGAACTTTGGCCCTGTTCTTCATCCTCTTGCTTGCTGGGGTTGCTTCTCTTATTGCCTCCAACAAAAGGGCGACTCAAGGAACCTACAGCCCCAGCGGTCAGGAGAAGGCTGGCCCTCGAGTGGAAATGTGGATCAGGATGCCGCCCCCGGCACTGGAAAGGCTCATCTAGGAGACTGCTGCTCTTCTCAGGACAGAGAAGAACATGATGAGTACCGGGTCGTGCCTGAGTGAAGATGGCTTTACATCACTAGAGATACATACAGCTGGGACTGTGGGAAGGACCTTCCTGTGGAGTCACTGAGTAGTTATGTCATCCATTCACAGAAGAGTGTCCCTGTGTTTGCCTGTCAGCCTCAGAATTAGCAAAACATCTAGCAGACAGAGAACACAGTATTTCAGAAGAACTCCAGAGGCTGCCCCTTAAACTCTTTACTGGTTGATCCACATAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681-'27-29,'27-25,28-29=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.099
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=70.5)
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGTGCTGGCCAGGTTTCAC
R:
GCAGCAGTCTCCTAGATGAGC
Band lengths:
257-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types