RnoEX0024402 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56270781-56311240:-
Coord C1 exon
chr13:56311112-56311240
Coord A exon
chr13:56307692-56307818
Coord C2 exon
chr13:56270781-56271256
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTTTTATATCCATTTTCAAGGTG
3' ss Score
8.44
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
ACACAGCAGATTACCCTCAACAGTCTGTGGGAACGAGAAGACAAACTTCACTTGCTACAACGGAGGCAGCTGCTCCGTGTTCCAGGAGGACTGGAAATGTGTGTGCCGGCCAGGTTTCACTGGAGAGTG
Seq A exon
GTGTGAAGAGAACATCAATGAATGTGCCTCTGACCCCTGCATCAACGGAGGCCTGTGCAGGGACTTGGTCAACAGATTCCAGTGCATCTGTGATGTGGCCTTTGCGGGCGAGCGCTGTGAGCTGGAT
Seq C2 exon
TTGGCTGATGACAGGCTCGTGGGCATTATCACCGCCGTGGGCTCCGGAACGTTGGTCCTGTTATTCATCCTCTTGCTTGCTGCAATTGTTTCTCTTATCGCTTCCAACAAGAGGGCGACTCAAGGAACCTACAGCCCCAGTGGTCAGGAGAAGGCCGGCCCTCGAGTGGAAATGTGGAGCAGGATGCCGCCCCCAGCACTGGAAAGGCTCATCTAGGAAGCCCCCTGCTCCTCTCAGAACAGAGCAGAGCATGTTGAGTACCCTGGTCATGCCGGACCGAAGGTGGTTTTACATCAGTAGAGATACTTACTGGAACTGTCGGAAGGGTTTCCATAGATACCTCATAGACCTTCCTGAGGGTTCGCCTTACATGACTGTTTAGTTATGTCATCCATTCACAGAAGAGTGTCCCTGTGTCATGTCTGTCAGCCTCAGAATTAGCAAACCATCTTCCAGACAGAGAACACAGTATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903-'17-24,'17-19,19-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.155
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=70.5)
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCAACAGTCTGTGGGAACG
R:
GCTGTAGGTTCCTTGAGTCGC
Band lengths:
250-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]