HsaEX6035780 @ hg19
Exon Skipping
Gene
ENSG00000134376 | CRB1
Description
crumbs homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:2343]
Coordinates
chr1:197407677-197447585:+
Coord C1 exon
chr1:197407677-197407805
Coord A exon
chr1:197411296-197411422
Coord C2 exon
chr1:197446794-197447585
Length
127 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTGTTTATTTTGAAGGTG
3' ss Score
10.2
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
ACAGAGCAGATTACCCTCAACAGTCTGTGGGAATGAGAAGACAAATCTCACTTGCTACAATGGAGGCAACTGCACAGAGTTCCAGACTGAATTAAAATGTATGTGCCGGCCAGGTTTTACTGGAGAATG
Seq A exon
GTGTGAAAAGGACATTGATGAGTGTGCCTCTGATCCGTGTGTCAATGGAGGTCTGTGCCAGGACTTACTCAACAAATTCCAGTGCCTCTGTGATGTTGCCTTTGCTGGCGAGCGCTGCGAGGTGGAC
Seq C2 exon
TTGGCAGATGACTTGATCTCCGACATTTTCACCACTATTGGCTCAGTGACTGTCGCCTTGTTACTGATCCTCTTGCTGGCCATTGTTGCTTCTGTTGTCACCTCCAACAAAAGGGCAACTCAGGGAACCTACAGCCCCAGCCGTCAGGAGAAGGAGGGCTCCCGAGTGGAAATGTGGAACTTGATGCCACCCCCTGCAATGGAGAGACTGATTTAGGAGCATTGTGTCCCTTCGAGATGGGGATCCACACACTGTGAATGTGATGACTGTACTTCAGGTATCTCTGACATACCTGACAATGTTAATCTGCAACTGGGATTACACTGGAACTACAGGAATGATTCCTTTGACCACCTTAAAAACTTTCACAGTGGTTCCGCTCGACACCATTGTTTTATTATATTATATCAGCCAATTGCAAAAAAAGTCTGTGCCAGTAATTTCAGCCTTATAATTAGCAAAAACATCTTCCAGAGAATAAAGTCTTCTGTGGCTTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134376-'15-16,'15-13,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.196
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=68.2)
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAACTGCACAGAGTTCCAGA
R:
GGGTGGCATCAAGTTCCACAT
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)