DreEX0024155 @ danRer10
Exon Skipping
Gene
ENSDARG00000100506 | crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
Coordinates
chr22:23466606-23483069:-
Coord C1 exon
chr22:23482947-23483069
Coord A exon
chr22:23482650-23482776
Coord C2 exon
chr22:23466606-23466890
Length
127 bp
Sequences
Splice sites
3' ss Seq
ACTATATATTTGTCGTACAGGTG
3' ss Score
7.01
5' ss Seq
GACGTAAGC
5' ss Score
7.1
Exon sequences
Seq C1 exon
ACCGCCAAAGCTCCCGGTGTCCATCTGTGGCGATGAACAGCAGAACTACACATGTTTCAATGGGGGGAACTGTTCTGACACCAACATGCCGTGCGACTGCCACCCTGGGTTTTCGGGTCACTG
Seq A exon
GTGTGAACTAGAACTTGATGAATGTAGATCCAATCCTTGCAAGAATGGCGGCTACTGCCAGAACATGGTCAACAGGTTCCAATGCGTCTGTGAAATGACTTTTGCCGGCGAGACCTGCGAAGTGGAC
Seq C2 exon
CTGAACGCAGAGAGTGTGACGTCTCAGCTGTTGCTCTCCATCAGCCTGGTGTGTGTGGTTCTGCTCTTGGTTGTTTTTGGTGTGACCACAGCTCTGGTCATTGCACTGAACCGAAGGGCCACACGGGGCACTTACAGCCCCAGTCGGCAGGAGAAGGAAGGCTCAAGGGTGGAAATGTGGAACATTGTACAACCTCCACCAATGGAGAGACTCATCTGATGCTTTTTACAAGACGGCGGAGAAAAGAAAGTGCTTAATTATGTGGCAGCTATAAGAGTTGGACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100506_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGGGAACTGTTCTGACACCA
R:
TCCACATTTCCACCCTTGAGC
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]