GgaEX6043493 @ galGal4
Exon Skipping
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2476868-2497968:-
Coord C1 exon
chr8:2497840-2497968
Coord A exon
chr8:2494710-2494836
Coord C2 exon
chr8:2476868-2477080
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTTGCACTCTTCCCTGTAGGTG
3' ss Score
11.82
5' ss Seq
GATGTAAGC
5' ss Score
6.16
Exon sequences
Seq C1 exon
ATATCGAAGATTACCCTATACAGTTTGTGGGAATGAAGACAGAAATCTCACCTGTTACAATTACGGCAACTGTACTGACCTTGGAGGCAAGCTGGCCTGTGTGTGCCTGCCAGGATTTGCTGGAGAACG
Seq A exon
GTGTGAAAAGGACATTGATGAGTGCAGCTCTGATCCATGCCTGAATGGAGGCCTCTGCCAGAACCTGCTCAACAAATTCCACTGCCTCTGCGACGTCAACTATGCTGGAGACCGCTGTGAGATCGAT
Seq C2 exon
TTGACAACTGACTTGATCTCGAACGTATTCACCTCCCTTGGCTCAGTAACGCTGGCTTTATTGATCCTCTTCTTGGCAGTTGTGGTTTCAGTCATTGCTGCCAATAAAAGGTCAACCCAAGGAACCTACAGCCCCAGCCGGCAGGAGAAAGATGGTGCCCGCGTCGAGATGTGGAGCATGGTGCAGCCACCGCCAATAGAGAGACTCATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287-'12-12,'12-11,13-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.114
Domain overlap (PFAM):
C1:
PF0000822=EGF=WD(100=72.7)
A:
PF0000822=EGF=PD(0.1=0.0),PF0000822=EGF=WD(100=72.1)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGCAACTGTACTGACCTTGG
R:
CACCATGCTCCACATCTCGAC
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]