BtaEX0010050 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008944 | CRB1
Description
Bos taurus crumbs homolog 1 (Drosophila) (CRB1), mRNA. [Source:RefSeq mRNA;Acc:NM_001192482]
Coordinates
chr16:78179240-78250502:+
Coord C1 exon
chr16:78179240-78179379
Coord A exon
chr16:78186018-78186200
Coord C2 exon
chr16:78249543-78250502
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCTGGCCGTTTATCCTGCAGGAT
3' ss Score
11.39
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
GTACAGCTGTACCTGCGCAGGTAGTGGGTTCACGGGGACACGCTGTGAGACCCTGCTGCCCCCGTGTTGGTCAGAGCCCTGTCACAACAACGCCATCTGCGAGGACAGTGCTGACCGCTACACCTGCCGCTGCCGGCCCG
Seq A exon
GATACACGGGCGCGCAGTGTGAGACCGACCTCGACGGATGCGGGAGCGGCCCCTGCCAGGCCGGCGGGCGGTGCGTGGAGCTGTCCTCGGAGACGGGGCGTGAGCGCCTGGCCCGGCTGCTGTCTGCATCCCGCCGCCCCGAAGCCTCCGGTTACGTCTGCATCTGTCCACCCGGACTCACAG
Seq C2 exon
GAGTCCACTGTGAAGAGGACGTGGATGAGTGCTTGTCCAGCCCTTGCCGCAATGGGGGCACTTGTGAGAACTCGCCTGAGGGTTACACTTGCCACTGCCCATTTGATCCCCATTCTGGAGTCTTCTTTGGAGGCAGGGACTGCTCTGATATTCTCCTGGGCTGTGCTGATCATCCGTGTCTAAACAACGGGACGTGTGTCCCCCACGTCCACGACGGCCAGCACGGATTCGACTGCCTGTGCCCCCCTGGCTACACCGGGTCACGGTGTGGAACCGTCACCACACTGTCCTTTTTGGGCAGTGGCTTCCTGTGGGTCTCAAGTGGCTCAGCTCTGGCCCAGGACTCAGGCTGTACCGTAGCCCTCAGGTTCCAGACCGTCCAGCCGGCGGCCCTGCTGCTCTTCCGGGGTGACCGGGACGTGTTTGTGATGCTGGAGGTGCTGGCTGGCTTTGTCCACTTGACCGTTCAAGTCAGCGATCGGCCGAAGGTGGTCCTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008944-'7-9,'7-5,8-9
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.081 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
A:
PF0000822=EGF=PD(16.1=8.1),PF0000822=EGF=PU(94.1=77.4)
C2:
PF0000822=EGF=PD(3.9=0.6),PF0000822=EGF=WD(100=7.8),PF0000822=EGF=WD(100=10.9),PF0221019=Laminin_G_2=WD(100=43.3),PF0000822=EGF=WD(100=9.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTCACAACAACGCCATCT
R:
ACGTCCCGTTGTTTAGACACG
Band lengths:
258-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development