MmuEX0012663 @ mm10
Exon Skipping
Gene
ENSMUSG00000063681 | Crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:MGI Symbol;Acc:MGI:2136343]
Coordinates
chr1:139248119-139323366:-
Coord C1 exon
chr1:139323227-139323366
Coord A exon
chr1:139314571-139314753
Coord C2 exon
chr1:139248119-139249075
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCTAAACTTTTATCCTGCAGGAT
3' ss Score
9.95
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTACCACTGTGACTGCACAGGTAGTGGATTCACAGGGATGCACTGTGAGTCCTTGATTCCTCTTTGTTGGTCAAAGCCTTGTCACAACGACGCGACATGTGAAGATACTGTTGACAGCTATATTTGTCACTGCCGGCCTG
Seq A exon
GATACACAGGTGCCCTGTGTGAGACAGACATAAATGAATGCAGTAGCAACCCCTGCCAATTTTGGGGGGAATGTGTCGAGCTGTCCTCAGAGGGTCTATATGGAAACACTGCTGGCCTGCCTTCCTCCTTCAGCTATGTTGGAGCCTCGGGCTATGTGTGTATCTGTCAGCCTGGATTCACAG
Seq C2 exon
GAATTCACTGTGAAGAAGACGTTGATGAATGTTTACTGCACCCTTGCCTAAATGGTGGTACTTGTGAGAACCTGCCTGGGAATTATGCCTGTCACTGTCCCTTTGATGACACTTCTAGGACATTTTATGGAGGAGAAAACTGCTCAGAAATTCTCCTGGGCTGCACTCATCACCAGTGTCTGAACAATGGAAAATGTATCCCTCATTTCCAAAATGGCCAGCATGGATTCACTTGCCAGTGTCTTTCTGGCTATGCGGGGCCCCTGTGTGAAACTGTCACCACACTTTCATTTGGGAGCAATGGCTTCCTATGGGTCACAAGTGGCTCCCATACAGGCATAGGGCCAGAATGTAACATATCCTTGAGGTTTCACACTGTTCAACCAAACGCACTTCTCCTCATCCGAGGCAACAAGGACGTGTCTATGAAGCTGGAGTTGCTGAATGGTTGTGTTCACTTATCAATTGAAGTCTGGAATCAGTTAAAGGTGCTCCTGTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063681-'4-13,'4-5,5-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(41.9=27.1),PF0000822=EGF=PU(80.6=52.1)
A:
PF0000822=EGF=PD(16.1=8.1),PF126612=hEGF=PU(69.2=14.5)
C2:
PF126612=hEGF=PD(23.1=0.9),PF0000822=EGF=WD(100=7.8),PF0000822=EGF=WD(100=10.9),PF0221019=Laminin_G_2=WD(100=43.1),PF0000822=EGF=WD(100=9.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATTTGTCACTGCCGGCCTG
R:
TCCATGCTGGCCATTTTGGAA
Band lengths:
248-431
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types