GgaEX7006665 @ galGal4
Exon Skipping
Gene
ENSGALG00000002287 | CRB1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:HGNC Symbol;Acc:HGNC:2343]
Coordinates
chr8:2506022-2529838:-
Coord C1 exon
chr8:2529699-2529838
Coord A exon
chr8:2529178-2529357
Coord C2 exon
chr8:2506022-2506975
Length
180 bp
Sequences
Splice sites
3' ss Seq
TTCTCCGCTCGCCCTTGCAGGCT
3' ss Score
11.43
5' ss Seq
GCGGTGAGC
5' ss Score
8.02
Exon sequences
Seq C1 exon
GTACAGCTGCAACTGCACTGGCACCGGGTTTATGGGCCTGCACTGCGAGAGCCTTGTACCCCCATGCTGGTCACAGCCGTGCTACAACAATGCCACATGTGAGGACAGTGCTGATGGATACACCTGTCACTGCTGGCCGG
Seq A exon
GCTACACCGGCTCCCACTGCGAGACCGACATCAGCGAGTGCAGCAGCGCTCCGTGCGCCTCGGGCCGCTGCCTGGAGCGCTCCTGGGCCGCCCGCTACGGCCACGAGCCCGCGCTGCAGCTGCCGTTCCGCCACGACCGCGCCGAGGGCTACGTGTGCGCCTGTCCGCCGGGCATCCGCG
Seq C2 exon
GTATTCACTGTGATGAAGACATCAATGAATGTCACACGAACCCTTGCCAAAATGGTGGCATCTGTGAGAACTTTCCTGGGAATTACACTTGCCATTGCCCACCTGCAGACAAAGAAGGGATTTTTTACGGCGGCTGGAACTGCACAGAAATCCTCCGTGGCTGTACTGATCAACAATGCCAAAATAATGGAATATGTATCCCACATTTAAAAAATGGCCATCATGGATTCAGCTGCATATGTTCACCTGGATATACTGGAATACACTGTGAAACTGTAACTACATTTTCTTTTCAAGGAAATGGTTTCCTTTGGTTGAAGAATCCCACAACCACTAAAGAGGAATCTTCCTATAATATAAACCTGAGGTTTCAGACTGTGCAACCAACAGCCTTTCTGTTTTACCGAGGGGAGAAAGACACATTTGTGAAGCTGGAGTTACTGAATGGCTACTTACATTTGTCCGTGCAAGTCAAAAACCAGCCACGGGCTCTTTTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002287-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.003
Domain overlap (PFAM):
C1:
PF0764510=EGF_CA=PD(40.5=31.2),PF0000822=EGF=PU(81.8=56.2)
A:
PF0000822=EGF=PD(15.2=8.2)
C2:
PF0000822=EGF=WD(100=10.3),PF0000822=EGF=WD(100=11.0),PF0221019=Laminin_G_2=WD(100=42.9),PF0000822=EGF=WD(100=9.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAGCCGTGCTACAACAA
R:
GATCAGTACAGCCACGGAGGA
Band lengths:
242-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]