RnoEX0024406 @ rn6
Exon Skipping
Gene
ENSRNOG00000010903 | Crb1
Description
crumbs 1, cell polarity complex component [Source:RGD Symbol;Acc:1309947]
Coordinates
chr13:56324746-56408285:-
Coord C1 exon
chr13:56408146-56408285
Coord A exon
chr13:56395250-56395432
Coord C2 exon
chr13:56324746-56325702
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCTGAACTTTTATCCTGCAGGAT
3' ss Score
9.83
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTACCACTGTGACTGCACGGGTAGTGGATTCAGAGGGATCCACTGTGAGTCCTTGATTCCTCTTTGTTGGTCAAAGCCTTGTCACAATGATGCGACATGTGAAGACACTGTTGACAGCTATATTTGTCACTGCTGGCCTG
Seq A exon
GATACACAGGTGCTCTGTGTGAGACGGACATAAATGAATGCAGTAGCAACCCCTGCCAATTTGGGGGGGAATGTGCCGAGCTGTCCTCACAGGATCTATATGGAAACACCGCTGGCCTGCCTTCCTCCTTCAGCTACCTTGGAGCCTCGGGCTATGTTTGTATCTGTCTGCCTGGATTCACAG
Seq C2 exon
GGAGGCACTGTGAAGAAGACATTGATGAATGTTTACCAAACCCCTGCCTAAATGGTGGTACTTGTCAGAACTTGCCTGGGAATTATACCTGTCACTGCCCCTTTGATGATACTTCTAGGACATTTTATGGAGGAGAAGACTGCTCTGAAATTCTCCTGGGTTGCACTCATCACCAGTGTCTGAACAATGGAAAATGTATCCCTCACTTCCAAAACGGCCAGCACGAATTCACCTGCCAGTGTCCTTCTGGCTACGCCGGTCCACTGTGTGAAACTGTCACCACACTTTCTTTTGAGAGCAATGGCTTCCTGTGGGTCACCAGTGGCTCCCATACAAGCATGGGGTCAGAATGTAACATATCCTTGAAGTTTCAGACTGTTCAGCCAAATGCACTTCTCCTTGTACGAGGCAACAAGGATATGTCTGTGAAGCTGGAGTTGCTGGACGGCTGTGTTCACTTATCAATCGAAGTCTGGAATCAGTCAAAGGTGCTCTTGTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010903_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)
A:
PF0000822=EGF=PD(16.1=8.1),PF126612=hEGF=PU(69.2=14.5)
C2:
PF126612=hEGF=PD(23.1=0.9),PF0000822=EGF=WD(100=7.5),PF0000822=EGF=WD(100=10.9),PF0221019=Laminin_G_2=WD(100=43.1),PF0000822=EGF=WD(100=9.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCTTGTCACAATGATGCGA
R:
ACACTGGTGATGAGTGCAACC
Band lengths:
245-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]