DreEX0024154 @ danRer10
Exon Skipping
Gene
ENSDARG00000100506 | crb1
Description
crumbs family member 1, photoreceptor morphogenesis associated [Source:ZFIN;Acc:ZDB-GENE-050208-382]
Coordinates
chr22:23491161-23497493:-
Coord C1 exon
chr22:23497351-23497493
Coord A exon
chr22:23495533-23495715
Coord C2 exon
chr22:23491161-23492090
Length
183 bp
Sequences
Splice sites
3' ss Seq
TCATATTTGTGTTGTTCCAGGGT
3' ss Score
9.02
5' ss Seq
CAGGTACCT
5' ss Score
8.16
Exon sequences
Seq C1 exon
CTACCGCTGTGACTGCTCACAGACTGCTAACTTCACTGGTGTTGACTGTGAGATCCCGCCTCCGCCCTGCTGGTCTCAACCCTGCCTCAACAGCGCCCTCTGTGAGAATCAACAGGAGAACTACACCTGCAACTGCTGGCCAG
Seq A exon
GGTTTGAAGGGCGTAACTGTGAGGTAGACGTCAGTGAATGTGAAAGCAATCCCTGTGTGAATGAAGGCATTTGCATGGAGCTTTCTTGGAAAACACTTTACGGTACTGAGCCCCTGTTTACAGCTAGATACAATCCCAGACTTGCTTCCGGGTTCATCTGCAAGTGTCCGCCAGGATTCTCAG
Seq C2 exon
GTGCCTTGTGCGAGCAAAACACAACTGCCTGTACCACCAGCCCATGTCATAATGGAGCCACATGTGAAGACTTCCTAGGCAGCTACAAGTGCATCTGCCCTTCTGAAAGCCAAGATGGAGTCCTCTACGGTGGTCGAAACTGTAGCGAGCCTCTTACAGGTTGCGAAGGTCACGAGTGCCAGAACGGAGCGTCCTGCATCCCATTCCTCAGCGAAGGTGTACATGGATACAGTTGCATCTGTCAGCCTGGCTACACCGGCTCTTACTGCCAAACGCTCACTGTGTTCTCCTTTGAGACAAGCAGAGCATTCTTGCACCTGCAGACCCCGCTGCTGGGTGCAGAAACATATTTCAATATCACGCTAAGCTTTCGTACAGTCCTGGAGAACACAGTGCTCTTCCAAAGGGGCAGCGGAGGGGTCACACTCAGCCTGGAGATACAGGAGACACACCTGATTCTTGATCTTAAGACTGACCCTCAGCCAAACGCAACCAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100506-'6-8,'6-7,8-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(45.5=30.6),PF0000822=EGF=PU(81.8=55.1)
A:
PF0000822=EGF=PD(15.2=8.1),PF0000822=EGF=PU(94.1=77.4)
C2:
PF0000822=EGF=PD(3.9=0.6),PF0000822=EGF=WD(100=14.1),PF0000822=EGF=WD(100=13.5),PF0221019=Laminin_G_2=WD(100=41.5),PF0000822=EGF=WD(100=10.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTCAACCCTGCCTCAACAG
R:
CGTGACCTTCGCAACCTGTAA
Band lengths:
245-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]