HsaEX6035784 @ hg19

Exon Skipping

Gene

ENSG00000134376 | CRB1

Description

crumbs homolog 1 (Drosophila) [Source:HGNC Symbol;Acc:2343]

Coordinates

chr1:197316470-197391086:+

Coord C1 exon

chr1:197316470-197316609

Coord A exon

chr1:197325961-197326143

Coord C2 exon

chr1:197390130-197391086

Length

183 bp

Sequences

Splice sites

3' ss Seq

TCTGAATTTTCATCATGCAGGAT

3' ss Score

7.14

5' ss Seq

CAGGTGAGG

5' ss Score

10.07

Exon sequences

Seq C1 exon

ATATAGCTGTAACTGCACGGGTAGTGGATTCACAGGGACACACTGTGAGACCTTGATGCCTCTTTGTTGGTCAAAACCTTGTCACAATAATGCTACATGTGAGGACAGTGTTGACAATTACACTTGTCACTGCTGGCCTG

Seq A exon

GATACACAGGTGCCCAGTGTGAGATCGACCTCAATGAATGCAATAGTAACCCCTGCCAGTCCAATGGGGAATGTGTGGAGCTGTCCTCAGAGAAACAATATGGACGCATCACTGGACTGCCTTCTTCTTTCAGCTACCATGAAGCCTCAGGTTATGTCTGTATCTGTCAGCCTGGATTCACAG

Seq C2 exon

GAATCCACTGCGAAGAAGACGTCAATGAATGTTCTTCAAACCCTTGCCAAAATGGTGGTACTTGTGAGAACTTGCCTGGGAATTATACTTGCCATTGCCCATTTGATAACCTTTCTAGAACTTTTTATGGAGGAAGGGACTGTTCTGATATTCTCCTGGGCTGTACCCATCAGCAATGTCTAAATAATGGAACATGCATCCCTCACTTCCAAGATGGCCAGCATGGATTCAGCTGCCTATGTCCATCTGGCTACACCGGGTCCCTGTGTGAAATCGCAACCACACTTTCATTTGAGGGCGATGGCTTCCTGTGGGTCAAAAGTGGCTCAGTGACAACCAAGGGCTCAGTTTGTAACATAGCCCTCAGGTTTCAGACTGTTCAGCCAATGGCTCTTCTACTTTTCCGAAGCAACAGGGATGTGTTTGTGAAGCTGGAGCTGCTAAGTGGCTACATTCACTTATCAATTCAGGTCAATAATCAGTCAAAGGTGCTTCTGTTC

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000134376-'3-7,'3-3,4-7=AN

Average complexity

A_C1

Mappability confidence:

100%=100=100%

Protein Impact

Alternative protein isoforms (Ref)

No structure available

Features

Disorder rate (Iupred):

C1=0.000 A=0.000 C2=0.000

Domain overlap (PFAM):

C1:

PF0000822=EGF=PD(43.8=29.2),PF0000822=EGF=PU(80.6=52.1)

A:

PF0000822=EGF=PD(12.1=6.5),PF0000822=EGF=PU(94.1=77.4)

C2:

PF0000822=EGF=PD(3.9=0.6),PF0000822=EGF=WD(100=7.5),PF0000822=EGF=WD(100=10.9),PF0221019=Laminin_G_2=WD(100=43.1),PF129132=SH3_6=WD(100=8.1),PF0000822=EGF=WD(100=9.7)

Main Inclusion Isoform:

ENSP00000356370