BtaEX0010057 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000037489 | CRCP
Description
Bos taurus CGRP receptor component (CRCP), mRNA. [Source:RefSeq mRNA;Acc:NM_001077870]
Coordinates
chr25:28276936-28294982:+
Coord C1 exon
chr25:28276936-28277030
Coord A exon
chr25:28288506-28288563
Coord C2 exon
chr25:28294160-28294982
Length
58 bp
Sequences
Splice sites
3' ss Seq
CTGTACTTTTCTTTTGACAGAGC
3' ss Score
8.28
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACATTAAAATACATATCAAAAACACCATGTAAGCACCAGAGTCCTGAGATTGTGAGAGAATTTCTGACAGCAATGAAAAGCCACAAGTTGACCAA
Seq A exon
AGCTGAAAAGCTTCAGCTGCTGAATCACAGGCCTGTGACTGCTGTTGAGATCCAGCTG
Seq C2 exon
ATGGTGGAGGAGAGTGAGGAACGGCTGACAGAGGAGCAAATCGAAGCTCTGCTCCACACCGTCACAAGCATCCTCCCCGCGGGGCCAGAGGCCGAGCAGCAGCAGAATGCCAGTGACGACGTGGCGATGGACGAGGAGGACCCCGCGTAGAAGAGCACAGCTGGCCCGAGTGTCTCCTGAAGTTGAAGGCCCAGCAGCCGTTTCCCAGACATTCAGAGGATTGTTTATTTGATTTTACCGTCTATCCCAACAGGCCTGATTTCCCGGTTAGTTGGGTAAACCACAAAAATAATCTTAAAAGAAATCCTTGTGCCTCTGTGAGAACAAACATGGTGGACTGGCTGAGATTGTCAGGGCAGAGAGCTGAAGAGAGGAGGAGCGAGTCAAAAAGGACAGTGACTGTGGAACTCTCAGTGGTAAAAATATTTCTTCTGCGGCCTTTGCCATGGTTGTGGGAAGGTCTTTGTACACAGCTGGTAAAATACTTGCCTTGGCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037489_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.156 A=0.300 C2=0.857
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(27.0=100),PF149421=Muted=PU(4.5=9.4)
A:
PF0387411=RNA_pol_Rpb4=FE(16.5=100),PF149421=Muted=FE(28.4=100)
C2:
PF0387411=RNA_pol_Rpb4=PD(20.9=48.0),PF149421=Muted=PD(64.2=86.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCATGTAAGCACCAGAGTCC
R:
GTGTGGAGCAGAGCTTCGATT
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development