MmuEX0012675 @ mm9
Exon Skipping
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130518076-130536659:+
Coord C1 exon
chr5:130518076-130518170
Coord A exon
chr5:130524796-130524853
Coord C2 exon
chr5:130535575-130536659
Length
58 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTTTTCTTTTGACAGAGC
3' ss Score
9.11
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACACTAAAGTACATATCAAAAACACCATGTAGGAACCAGAGTCCAGCGATTGTCCAAGAATTCCTCACAGCAATGAAAAGCCACAAGCTGACCAA
Seq A exon
AGCGGAGAAGCTGCAGCTGCTGAATCACAGGCCGATGACTGCGGTGGAGATCCAGCTG
Seq C2 exon
ATGGTAGAAGAGAGTGAAGAACGGCTCACAGAGGAGCAGATCGAAGCCCTCCTGCACACTGTCACTAGCATTCTGCCTGCAGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGAAGAGGAGGAGCCAGCATAGATGTGCAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATGTTCAGAGAACTCTTTATTTGGCCTGACCCCCTCTCTCAGTATGCCTGATCTCAGGATTTGTTGGGGGAAAAAAATCACAAAAATAAGATGAAAAGAAATCTTTGTGCTTTGGGGTCAGAGCAGGGCAGGGGCTAAGATGGGGGAGCAGGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCACACAGTGGGAGCTCGTCAGGCGCTTTGATGACTGTTGTAGGCAATGTCAGGCACTGCTGGGTAGAATGGAGCTGGGAGAACGGACTCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532-'5-5,'5-3,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.031 A=0.550 C2=0.878
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(27.0=100),PF149421=Muted=PU(4.7=9.4)
A:
PF0387411=RNA_pol_Rpb4=FE(16.5=100),PF149421=Muted=FE(29.7=100)
C2:
PF0387411=RNA_pol_Rpb4=PD(20.9=48.0),PF149421=Muted=PD(62.5=80.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAGAGTCCAGCGATTG
R:
GCAGGCAGAATGCTAGTGACA
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: