MmuEX0012675 @ mm10
Exon Skipping
Gene
ENSMUSG00000025532 | Crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:MGI Symbol;Acc:MGI:1100818]
Coordinates
chr5:130042206-130060789:+
Coord C1 exon
chr5:130042206-130042300
Coord A exon
chr5:130048926-130048983
Coord C2 exon
chr5:130059705-130060789
Length
58 bp
Sequences
Splice sites
3' ss Seq
GTGTGCTTTTCTTTTGACAGAGC
3' ss Score
9.11
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACACTAAAGTACATATCAAAAACACCATGTAGGAACCAGAGTCCAGCGATTGTCCAAGAATTCCTCACAGCAATGAAAAGCCACAAGCTGACCAA
Seq A exon
AGCGGAGAAGCTGCAGCTGCTGAATCACAGGCCGATGACTGCGGTGGAGATCCAGCTG
Seq C2 exon
ATGGTAGAAGAGAGTGAAGAACGGCTCACAGAGGAGCAGATCGAAGCCCTCCTGCACACTGTCACTAGCATTCTGCCTGCAGGTCCAGAGGATGAACAGAGCAAAAGCACTAGCAATGACGTGGCTATGGAAGAGGAGGAGCCAGCATAGATGTGCAGCTGGCCAAGTTGTTCGTGAAGCTCAAAGCTGCAGCAGCCATTTCCTGGATGTTCAGAGAACTCTTTATTTGGCCTGACCCCCTCTCTCAGTATGCCTGATCTCAGGATTTGTTGGGGGAAAAAAATCACAAAAATAAGATGAAAAGAAATCTTTGTGCTTTGGGGTCAGAGCAGGGCAGGGGCTAAGATGGGGGAGCAGGACTGCAGCTGTCTGGGGTAGAAAGGCTTGTGTGGCCTGTGCCGCACATGCACACAGTGGGAGCTCGTCAGGCGCTTTGATGACTGTTGTAGGCAATGTCAGGCACTGCTGGGTAGAATGGAGCTGGGAGAACGGACTCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025532-'8-9,'8-7,15-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.016 A=0.775 C2=0.910
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(27.0=100)
A:
PF0387411=RNA_pol_Rpb4=PD(23.1=60.0)
C2:
PF0387411=RNA_pol_Rpb4=PD(20.9=48.0)
Main Skipping Isoform:
ENSMUST00000026608fB8213
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAACCAGAGTCCAGCGATTG
R:
GCAGGCAGAATGCTAGTGACA
Band lengths:
144-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types