RnoEX0024428 @ rn6
Exon Skipping
Gene
ENSRNOG00000000901 | Crcp
Description
CGRP receptor component [Source:RGD Symbol;Acc:620753]
Coordinates
chr12:30125168-30144103:-
Coord C1 exon
chr12:30144009-30144103
Coord A exon
chr12:30136740-30136797
Coord C2 exon
chr12:30125168-30126333
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTGTGCTTTTCTTTTGACAGAGC
3' ss Score
8.97
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACATTAAAATACATATCGAAAACTCCATGTAAGAACCAGAGTCCGGCGATTGTCCAAGAATTCCTCACAGCAATGAAGAGCCACAAGCTGACCAA
Seq A exon
AGCCGAGAAGCTTCAGCTGCTGAATCACAGGCCAATGACCGCTGTTGAGATCCAGCTG
Seq C2 exon
ATGGTGGAAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTGAAGCTCTCCTGCACACTGTCACCAGCATCCTGCCTGCAGGTCCAGAGGATGAGCAGAGCAAAAGCACTAGCAATGACGCGGCAATGGAAGAGGAGGAGCCTGCATAGACATCTGTGGCCATTATGACACAGCTGGCCAGGTTGTTCGTGATGCTCAAAGCCACAACAGCCATTTCCTGGACGTTCAGAGAACTGTTTATTCGGCCTGACCCCTCTCTCAAATATTCCTGATCTCAGGATTGGTTGAGAAAAAAAATCACAAAAATAAGATGAAAAGAAATCTTTGTGCCTTGGGTTCAAGAAACATGGGGTCAGAGAAGGGCAGAGGGCTCGAGATGGGGCAGCATGGCTATGCAGCCCTCTGGGTAGAAAGGCTTGTGTGGCCTCTGTCGCACTTGTACACAGTGGGGAGCTATTCAGGCACTTTGATGACTGTGTTGTAGGCAATGTCAGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000901_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.300 C2=0.898
Domain overlap (PFAM):
C1:
PF061336=DUF964=FE(30.1=100),PF0387411=RNA_pol_Rpb4=FE(27.0=100)
A:
PF061336=DUF964=PD(6.8=35.0),PF0387411=RNA_pol_Rpb4=FE(16.5=100)
C2:
PF0387411=RNA_pol_Rpb4=PD(20.9=48.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCACAGCAATGAAGAGCCA
R:
TCTGCTCATCCTCTGGACCTG
Band lengths:
133-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]