GgaEX1017532 @ galGal3
Exon Skipping
Gene
ENSGALG00000002587 | CRCP
Description
NA
Coordinates
chr19:4932627-4951991:+
Coord C1 exon
chr19:4932627-4932721
Coord A exon
chr19:4942929-4942986
Coord C2 exon
chr19:4951254-4951991
Length
58 bp
Sequences
Splice sites
3' ss Seq
GACGCTTTGTTTGCACACAGGGC
3' ss Score
7.95
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
ACACTGAAATACATCTCAAAAACACCGTGCAGATACCAGAGTCCTGAGACTGTCAGAGAGTTCCTCATTGCAATGAAGGGCCATAAGCTGACCAA
Seq A exon
GGCTGAAAAGCTGCAGTTGCTGAACCACAGGCCTGTGACAGCAGTTGAAATACAGCTG
Seq C2 exon
ATGGTAGAAGAAAGTGAGGAAAGACTGACAGAGGAGCAGATCGAGTCGCTTCTCCAGACAGTCGCCAGCATTCTTCCAGGGGATCCAGAGGAACAGCAGAGAGACTCAGCGATGGAAACGGAAGGCAGAGGCAGCCAGTAACAGGAGGCATCTAGACCAAAGCCAGTAACAATTTCAGCAGGAGAGAATTGGTTAATCTTTACTTGATACCGGTTTCATCTTGTATTTGGCATCATTGTAAAATATATTACATTTTTTTATTACTCAGAGGTGATGAGGACACCCGTTGTTTACCAGTAGGCGTGGAAGAGGACACTGTTGTTCCAGCATGTTGTCTTATACTGGGGCGATAGTGACTGACTTTATAACGTAGCAGACAAATTACAAGGCACAAAATGGGAAGCTTTTTACATTACCCATGTAACAGCTGTACATTTGAGTAGGCTAATATACAGCTGGCAATGTTTTAATTATCACAGCAGTACTATAATTATAATTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002587-'4-10,'4-6,6-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.100 C2=0.658
Domain overlap (PFAM):
C1:
PF102924=7TM_GPCR_Srab=FE(22.0=100),PF0387411=RNA_pol_Rpb4=FE(27.2=100),PF149421=Muted=PU(4.7=9.4)
A:
PF102924=7TM_GPCR_Srab=FE(13.5=100),PF0387411=RNA_pol_Rpb4=FE(16.7=100),PF149421=Muted=FE(29.7=100)
C2:
PF102924=7TM_GPCR_Srab=PD(15.6=46.8),PF0387411=RNA_pol_Rpb4=PD(21.1=51.1),PF149421=Muted=PD(62.5=85.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACCGTGCAGATACCAGAGT
R:
TGTCTGGAGAAGCGACTCGAT
Band lengths:
134-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]