HsaEX1009770 @ hg38
Exon Skipping
Gene
ENSG00000241258 | CRCP
Description
CGRP receptor component [Source:HGNC Symbol;Acc:HGNC:17888]
Coordinates
chr7:66134280-66154561:+
Coord C1 exon
chr7:66134280-66134374
Coord A exon
chr7:66145443-66145500
Coord C2 exon
chr7:66152208-66154561
Length
58 bp
Sequences
Splice sites
3' ss Seq
GCTGTACTTTCCCTCCACAGAGC
3' ss Score
10.74
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ACGTTAAAATACATATCAAAAACACCATGCAGGCACCAGAGTCCTGAAATTGTCAGAGAATTTCTCACAGCATTGAAAAGCCACAAGTTGACCAA
Seq A exon
AGCTGAGAAGCTCCAGCTGCTGAACCACCGGCCTGTGACTGCTGTGGAGATCCAGCTG
Seq C2 exon
ATGGTGGAAGAGAGTGAAGAGCGGCTCACGGAGGAGCAGATTGAAGCTCTTCTCCACACCGTCACCAGCATTCTGCCTGCAGAGCCAGAGGCTGAGCAGAAGAAGAATACAAACAGCAATGTGGCAATGGACGAAGAGGACCCAGCATAGAAGAGCACAGCTGGCCCCGGCGTTTCATGAAGTCAGAAGGCCTGGCAGCCATTTCCTGGACGTTGAGAGGATTGTTTATTTGATTTTTATCCTCATCCCAGCAGGCCTGGCTTTGTGGTTAGTTGGGTACATCACAAAAATAAGTTAAAAAGAAATATTTGTGCCTTGGGGAGAAGAAACATGGTGAAAACAGGCTGAGGTTGTCAGGGCAGAGAGCTGAAGGTGGGGACAGTGACCGCGGACCCCTCTGTGCTTGAAAGATTTCCTCCACGGCCTTTGCCCCAGTTGTGGGGAGGTCTCTGTGCACAGCGGGGAAAATGCTTGTGTCGCCTTTGGTGGGCCATGTCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000241258_MULTIEX1-5/6=3-C2
Average complexity
S
Mappability confidence:
83%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.240 C2=0.850
Domain overlap (PFAM):
C1:
PF0387411=RNA_pol_Rpb4=FE(35.6=100)
A:
PF0387411=RNA_pol_Rpb4=FE(40.4=100),PF149421=Muted=FE(28.4=100)
C2:
PF0387411=RNA_pol_Rpb4=PD(51.1=48.0),PF149421=Muted=PD(67.2=90.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAAACACCATGCAGGCACC
R:
GACGGTGTGGAGAAGAGCTTC
Band lengths:
142-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains