DreEX0024169 @ danRer10
Exon Skipping
Gene
ENSDARG00000069373 | crcp
Description
calcitonin gene-related peptide-receptor component protein [Source:ZFIN;Acc:ZDB-GENE-060825-150]
Coordinates
chr21:31207805-31211993:-
Coord C1 exon
chr21:31211899-31211993
Coord A exon
chr21:31211526-31211583
Coord C2 exon
chr21:31207805-31208322
Length
58 bp
Sequences
Splice sites
3' ss Seq
TTTTCTATTTCTGTTCAAAGAGC
3' ss Score
6.97
5' ss Seq
CTGGTATGA
5' ss Score
6.69
Exon sequences
Seq C1 exon
ACCCTGAAGTACCTCTCTAAGACGCCATGTGTTCATCAGAAACCAGAGACAGTGAAGGAGTTCCTCACCGCCATGCTGCCTCACAAACTTACTAA
Seq A exon
AGCAGAGAAGCTGCAGCTCTTAAACCACAGACCTCAGACTGCTGTTGAGATCCAGCTG
Seq C2 exon
ATGGTAGAGGAAAGTGAAGAAAGGCTGACAGAAGAACAGATCGATGAACTTATACAGAAAGTCACGGACATCCTGCCCGGTGACCCACAGACAGAAGCCAATGAATCTGCTGATCCTCAAATGGACACCAACCAATAGCATCACCCCCAGAAACTCGCAGTTTAATTTTTTTATTTTTTTTTAGTTTTTCATCCTTAAACGCCCAAGAGACAGTGCTAATACTTACATTTACTGTTGATCTTTATTATGTCAATGAAAACATTAGCCATTGCTACATCTAAAATAATAAAAATCCATATTTATTTAACCATAAATATCATGTTATTTTGTCAGCATTGTTTCCCATGCACAATTGTCGAAGCTGCATTGATCTTTGTTTGAGTAAGGATATGATCTTCTGGGCTCAAGACAGTCTCAGTTCCTCTGCGACATCCTTCCTGTATTGCTACTCTTTATTTCAGCTCATAAATGTTACAATCACTGACCATTTTGATTTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069373_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=0.550 C2=0.911
Domain overlap (PFAM):
C1:
PF061336=DUF964=PD(33.8=78.1),PF0387411=RNA_pol_Rpb4=FE(27.0=100)
A:
PF0387411=RNA_pol_Rpb4=FE(16.5=100)
C2:
PF0387411=RNA_pol_Rpb4=PD(20.9=52.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGTTCCTCACCGCCATG
R:
CATTGGCTTCTGTCTGTGGGT
Band lengths:
143-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]