BtaEX0010168 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70269949-70273923:+
Coord C1 exon
chr3:70269949-70270098
Coord A exon
chr3:70273628-70273729
Coord C2 exon
chr3:70273828-70273923
Length
102 bp
Sequences
Splice sites
3' ss Seq
CATTCTTTTATATTATATAGAAA
3' ss Score
6.07
5' ss Seq
ATAGTAAGT
5' ss Score
8.65
Exon sequences
Seq C1 exon
GTTGGAATAGCAGCATGCCAAATTGCAAGAGCTTACGGCTTAAAGGTTTTGGGCACAGCTAGTACTGAGGAAGGACAAAAGATTGTTTTGGAAAATGGAGCCCACAAAGTGTTTAATCACAAAGAAGCTGACTATATTGATAAAATTAAG
Seq A exon
AAATCTGTTGGTGAAAAAGGAGTTGATGTGATTATTGAAATGTTAGCTAACGTAAATCTTAGTAATGATTTGAATCTTTTGTCACACGGAGGACGAGTAATA
Seq C2 exon
GTTGTTGGCAGCAGAGGCACTATTGAAATAAACCCACGGGACACCATGACAAAGGAATCTAGCATAAAAGGAGTTACTCTGTTTTCATCCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162_MULTIEX2-4/4=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.094
Domain overlap (PFAM):
C1:
PF082407=ADH_N=PD(14.2=42.0),PF0010721=ADH_zinc_N=FE(38.0=100)
A:
PF0010721=ADH_zinc_N=FE(25.6=100)
C2:
PF0010721=ADH_zinc_N=FE(24.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGGAATAGCAGCATGCCAA
R:
TGGTGGATGAAAACAGAGTAACTCC
Band lengths:
244-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development